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The way the bioinformatics should be...
Program description
454 SFF Workbench is an easy to use SFF file viewer, editor and converter. SFF Workbench is the first and only SFF editor with graphic interface on the entire bioinformatics market! With this tool we wanted to help the biologists to concentrate on their work instead of wasting time poking obscure commands in a console.
Features
SFF Viewer:
- Display SFF file details (size, total number of samples/reads, key sequence, flow characters)
- Display Roche details (index, manifest)
- Display the average quality of each sample (before and after end trimming)
- Display the sample length (before and after end trimming)
- Display quality values
- Display low quality/clipped ends in gray color
- User-friendly graphic interface. Compact/portable (no installation required, no admin password required
- Easy to use file browser (allows you to quickly locate and view SFF files)
SFF Editor:
- Split huge FastQ/SFF file in chunks of x reads
- Convert SFF to FastQ
- Convert SFF to Fasta
- Convert FastQ to Fasta (multiFasta)
- Trim poly-A/T tails
- Cut reads with average QV under specified threshold
- Cut reads if they contain N bases (the user can specify how many)
- Cut reads that are too short
- Cut reads that are too long
- Cut low complexity reads
- Trim low quality ends. Automatically detect and cut low quality bases at the end of each read.
- Split multiplexed files (MID/Barcode splitter)
- Dereplicate sequences
Performance:
454 SFF Workbench loads a 400MB SFF file (containing over 122000 samples) in only 2.5 seconds. It requires only 34MB of memory to display the entire content of the file. The test was performed on a Intel i5 @2.2 GHz, 3GB or RAM, low end hard drive running Windows 7.
Kwentong Kalibugan Ni Ninong: Repack
Kwentong Kalibugan ni Ninong: Ang Pagpapaliwanag sa mga Kwento ng mga Lolo
Pacing and Tension: A successful narrative in this genre often relies on the build-up of tension. Analyzing how a story handles the transition from initial interaction to the core conflict can reveal the author's skill in maintaining reader engagement. kwentong kalibugan ni ninong
Sa mga kwento, si Ninong ay inilalarawan bilang isang makapangyarihan at matatag na diyos. Siya ay may dalawang anak, sina Tala at Anitun. Si Tala ay ang diyosa ng mga bituin, samantalang si Anitun ay ang diyosa ng hangin. Siya rin ay may kaibigan na si Diwata, ang diyosa ng mga bundok at ng mga kagubatan. Kwentong Kalibugan ni Ninong: Ang Pagpapaliwanag sa mga
- Mga kwento ng paghihirap: Ito ay mga kwento na nagpapakita ng mga paghihirap na pinagdaanan ng mga lolo sa kanilang buhay, tulad ng mga kwento ng kahirapan, mga sakuna, o mga pagkawala ng mga mahal sa buhay.
- Mga kwento ng tagumpay: Ito ay mga kwento na nagpapakita ng mga tagumpay na nakamit ng mga lolo sa kanilang buhay, tulad ng mga kwento ng pagtatagumpay sa negosyo, mga pagkilala sa komunidad, o mga pagkakaroon ng mga prestihiyosong posisyon.
- Mga kwento ng pag-ibig: Ito ay mga kwento na nagpapakita ng mga karanasan ng pag-ibig ng mga lolo, tulad ng mga kwento ng pag-ibig sa pamilya, mga kwento ng pag-ibig sa bayan, o mga kwento ng pag-ibig sa Diyos.
- Mga kwento ng kabayanihan: Ito ay mga kwento na nagpapakita ng mga karanasan ng mga lolo sa pagtulong sa iba, tulad ng mga kwento ng pagtulong sa mga nangangailangan, mga kwento ng pagpapakita ng bayanihan, o mga kwento ng pagpapakita ng katapangan.
- Preserve traditional values and customs: The tales of Ninong reinforce important Filipino values such as respect for elders, community, and the natural world.
- Explain natural phenomena: The stories often provide creative explanations for natural events, such as eclipses, earthquakes, or changes in the weather.
- Entertain and inspire: The adventures of Ninong have captivated audiences for centuries, inspiring art, music, and literature.
Mula noon, si Ninong ay naging isang bayani sa kanilang bayan dahil sa kanyang katapangan at mahusay na pagtulong sa mga nangangailangan. Mga kwento ng paghihirap : Ito ay mga
More screenshots...
Do you want to see more screenshots? Then click here.
Download
| Name |
SFF Workbench |
| Version |
1.5.1 |
| Date |
11.2013 |
| Package size |
~ 6 MB |
| Download time |
less than 10 seconds (for DSL) |
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NOTE! This tool has been replaced by
NextGen SFF/FastQ Workbench
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What's new in this version...
News: The speed and memory requirements have been dramatically improved since v1.0! Opening 2GB files requires less than 80MB or RAM.
What's in the package/How to install it...
SFF Workbench is delivered in a small package together with other free molecular biology tools. Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder and double click the program you want to use.
SFF Workbench installs in any computer even if you don't have administrator rights. To uninstall SFF Workbench, just delete it.
How to use it...
A small introduction on how to use the program is available here.
Please note that the demo version of the program will not process all reads in a SFF file. Upon program registration this limitation will be removed.
Portability...
This software tool is really small so you can easily copy it on a floppy disk or USB flash stick and take it with you or send it to your colleagues via email.
Instant feedback...
Please help us make SFF Workbench better. Let us know if you have any feature requests and we will try to integrate them.
 Your feedback is important to us!
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